NiMARE
0.0.2
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NiMARE: Neuroimaging Meta-Analysis Research Environment
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Index
A
|
B
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C
|
D
|
E
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F
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G
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H
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I
|
K
|
L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
ALE (class in nimare.meta.cbma.ale)
,
[1]
ale_sleuth_workflow() (in module nimare.workflows.ale)
,
[1]
ALEKernel (class in nimare.meta.cbma.kernel)
,
[1]
ALESubtraction (class in nimare.meta.cbma.ale)
,
[1]
B
BHICP (class in nimare.meta.cbma.model)
,
[1]
BoltzmannModel (class in nimare.annotate.topic)
brainmap_decode() (in module nimare.decode.discrete)
,
[1]
C
CogAtLemmatizer (class in nimare.annotate.ontology)
commands_ (LDAModel attribute)
compute_log_likelihood() (GCLDAModel method)
conperm_workflow() (in module nimare.workflows.conperm)
,
[1]
convert_neurosynth_to_dataset() (in module nimare.io)
convert_neurosynth_to_dict() (in module nimare.io)
convert_neurosynth_to_json() (in module nimare.io)
convert_sleuth_to_dataset() (in module nimare.io)
convert_sleuth_to_dict() (in module nimare.io)
convert_sleuth_to_json() (in module nimare.io)
CoordCBP (class in nimare.parcellate.cbp)
,
[1]
copy() (MetaResult method)
corr_decode() (in module nimare.decode.continuous)
,
[1]
corr_dist_decode() (in module nimare.decode.continuous)
,
[1]
correct_fdr_bh() (MKDAChi2 method)
,
[1]
correct_fwe_permutation() (ALE method)
,
[1]
(KDA method)
,
[1]
(MKDAChi2 method)
,
[1]
(MKDADensity method)
,
[1]
D
Dataset (class in nimare.dataset)
download_abstracts() (in module nimare.extract)
download_cognitive_atlas() (in module nimare.extract)
download_mallet() (in module nimare.extract)
download_nidm_pain() (in module nimare.extract)
download_peaks2maps_model() (in module nimare.extract)
E
Estimator (class in nimare.base)
expand_counts() (in module nimare.annotate.ontology)
extract_cogat() (in module nimare.annotate.ontology)
extract_cogpo() (in module nimare.annotate.ontology)
F
fdr() (in module nimare.stats)
FDRCorrector (class in nimare.correct)
FFX_GLM (class in nimare.meta.ibma)
,
[1]
ffx_glm() (in module nimare.meta.ibma)
,
[1]
Fishers (class in nimare.meta.ibma)
,
[1]
fishers() (in module nimare.meta.esma)
,
[1]
fit() (ALE method)
,
[1]
(ALESubtraction method)
,
[1]
(BHICP method)
,
[1]
(CoordCBP method)
,
[1]
(Estimator method)
(FFX_GLM method)
,
[1]
(Fishers method)
,
[1]
(GCLDAModel method)
(HPGRF method)
,
[1]
(IBMAEstimator method)
,
[1]
(ImCBP method)
,
[1]
(KDA method)
,
[1]
(LDAModel method)
(MAMP method)
,
[1]
(MAPBOT method)
,
[1]
(MFX_GLM method)
,
[1]
(MKDAChi2 method)
,
[1]
(MKDADensity method)
,
[1]
(RFX_GLM method)
,
[1]
(SBLFR method)
,
[1]
(SBR method)
,
[1]
(SCALE method)
,
[1]
(Stouffers method)
,
[1]
(WeightedStouffers method)
,
[1]
fsl_glm() (in module nimare.meta.ibma)
,
[1]
FWECorrector (class in nimare.correct)
G
gclda_decode_map() (in module nimare.decode.continuous)
,
[1]
gclda_decode_roi() (in module nimare.decode.discrete)
,
[1]
gclda_encode() (in module nimare.decode.encode)
,
[1]
GCLDAModel (class in nimare.annotate.topic)
generate_cooccurrence() (in module nimare.annotate.text)
,
[1]
generate_counts() (in module nimare.annotate.text)
,
[1]
get() (Dataset method)
get_images() (Dataset method)
get_labels() (Dataset method)
get_map() (MetaResult method)
get_metadata() (Dataset method)
get_params() (ALE method)
,
[1]
(ALEKernel method)
,
[1]
(ALESubtraction method)
,
[1]
(BHICP method)
,
[1]
(BoltzmannModel method)
(CoordCBP method)
,
[1]
(Dataset method)
(Estimator method)
(FFX_GLM method)
,
[1]
(Fishers method)
,
[1]
(GCLDAModel method)
(HPGRF method)
,
[1]
(IBMAEstimator method)
,
[1]
(ImCBP method)
,
[1]
(KDA method)
,
[1]
(KDAKernel method)
,
[1]
(KernelTransformer method)
(LDAModel method)
(MAMP method)
,
[1]
(MAPBOT method)
,
[1]
(MFX_GLM method)
,
[1]
(MKDAChi2 method)
,
[1]
(MKDADensity method)
,
[1]
(MKDAKernel method)
,
[1]
(NiMAREBase method)
(Peaks2MapsKernel method)
,
[1]
(RFX_GLM method)
,
[1]
(SBLFR method)
,
[1]
(SBR method)
,
[1]
(SCALE method)
,
[1]
(Stouffers method)
,
[1]
(Text2BrainModel method)
(Transformer method)
(WeightedStouffers method)
,
[1]
(Word2BrainModel method)
get_probs() (GCLDAModel method)
get_resource_path() (in module nimare.utils)
get_studies_by_coordinate() (Dataset method)
get_studies_by_label() (Dataset method)
get_studies_by_mask() (Dataset method)
get_template() (in module nimare.utils)
get_texts() (Dataset method)
H
HPGRF (class in nimare.meta.cbma.model)
,
[1]
I
IBMAEstimator (class in nimare.meta.ibma)
,
[1]
ImCBP (class in nimare.parcellate.cbp)
,
[1]
K
KDA (class in nimare.meta.cbma.mkda)
,
[1]
KDAKernel (class in nimare.meta.cbma.kernel)
,
[1]
KernelTransformer (class in nimare.meta.cbma.kernel)
L
LDAModel (class in nimare.annotate.topic)
listify() (in module nimare.utils)
load() (nimare.annotate.topic.BoltzmannModel class method)
(nimare.annotate.topic.GCLDAModel class method)
(nimare.annotate.topic.LDAModel class method)
(nimare.annotate.vector.Text2BrainModel class method)
(nimare.annotate.vector.Word2BrainModel class method)
(nimare.base.Estimator class method)
(nimare.base.NiMAREBase class method)
(nimare.base.Transformer class method)
(nimare.dataset.Dataset class method)
(nimare.meta.cbma.ale.ALE class method)
,
[1]
(nimare.meta.cbma.ale.ALESubtraction class method)
,
[1]
(nimare.meta.cbma.ale.SCALE class method)
,
[1]
(nimare.meta.cbma.kernel.ALEKernel class method)
,
[1]
(nimare.meta.cbma.kernel.KDAKernel class method)
,
[1]
(nimare.meta.cbma.kernel.KernelTransformer class method)
(nimare.meta.cbma.kernel.MKDAKernel class method)
,
[1]
(nimare.meta.cbma.kernel.Peaks2MapsKernel class method)
,
[1]
(nimare.meta.cbma.mkda.KDA class method)
,
[1]
(nimare.meta.cbma.mkda.MKDAChi2 class method)
,
[1]
(nimare.meta.cbma.mkda.MKDADensity class method)
,
[1]
(nimare.meta.cbma.model.BHICP class method)
,
[1]
(nimare.meta.cbma.model.HPGRF class method)
,
[1]
(nimare.meta.cbma.model.SBLFR class method)
,
[1]
(nimare.meta.cbma.model.SBR class method)
,
[1]
(nimare.meta.ibma.FFX_GLM class method)
,
[1]
(nimare.meta.ibma.Fishers class method)
,
[1]
(nimare.meta.ibma.IBMAEstimator class method)
,
[1]
(nimare.meta.ibma.MFX_GLM class method)
,
[1]
(nimare.meta.ibma.RFX_GLM class method)
,
[1]
(nimare.meta.ibma.Stouffers class method)
,
[1]
(nimare.meta.ibma.WeightedStouffers class method)
,
[1]
(nimare.parcellate.cbp.CoordCBP class method)
,
[1]
(nimare.parcellate.cbp.ImCBP class method)
,
[1]
(nimare.parcellate.mamp.MAMP class method)
,
[1]
(nimare.parcellate.mapbot.MAPBOT class method)
,
[1]
M
macm_workflow() (in module nimare.workflows.macm)
,
[1]
MAMP (class in nimare.parcellate.mamp)
,
[1]
MAPBOT (class in nimare.parcellate.mapbot)
,
[1]
MetaResult (class in nimare.results)
MFX_GLM (class in nimare.meta.ibma)
,
[1]
mfx_glm() (in module nimare.meta.ibma)
,
[1]
MKDAChi2 (class in nimare.meta.cbma.mkda)
,
[1]
MKDADensity (class in nimare.meta.cbma.mkda)
,
[1]
MKDAKernel (class in nimare.meta.cbma.kernel)
,
[1]
mm2vox() (in module nimare.utils)
mni2tal() (in module nimare.utils)
N
neurosynth_decode() (in module nimare.decode.discrete)
,
[1]
nimare.annotate (module)
nimare.annotate.ontology (module)
nimare.annotate.text (module)
nimare.annotate.topic (module)
nimare.annotate.vector (module)
nimare.base (module)
nimare.correct (module)
nimare.dataset (module)
nimare.decode (module)
nimare.decode.continuous (module)
nimare.decode.discrete (module)
nimare.decode.encode (module)
nimare.extract (module)
nimare.io (module)
nimare.meta (module)
nimare.meta.cbma.ale (module)
nimare.meta.cbma.kernel (module)
nimare.meta.cbma.mkda (module)
nimare.meta.cbma.model (module)
nimare.meta.esma (module)
nimare.meta.ibma (module)
nimare.parcellate (module)
nimare.parcellate.cbp (module)
nimare.parcellate.mamp (module)
nimare.parcellate.mapbot (module)
nimare.results (module)
nimare.stats (module)
nimare.utils (module)
nimare.workflows (module)
nimare.workflows.ale (module)
nimare.workflows.conperm (module)
nimare.workflows.macm (module)
nimare.workflows.peaks2maps (module)
nimare.workflows.scale (module)
NiMAREBase (class in nimare.base)
null_to_p() (in module nimare.stats)
O
one_way() (in module nimare.stats)
ontology_ (CogAtLemmatizer attribute)
P
p_to_z() (in module nimare.stats)
p_topic_g_doc_ (LDAModel attribute)
p_topic_g_voxel_ (GCLDAModel attribute)
p_topic_g_word_ (GCLDAModel attribute)
p_voxel_g_topic_ (GCLDAModel attribute)
p_word_g_topic_ (GCLDAModel attribute)
(LDAModel attribute)
peaks2maps_workflow() (in module nimare.workflows.peaks2maps)
,
[1]
Peaks2MapsKernel (class in nimare.meta.cbma.kernel)
,
[1]
pearson() (in module nimare.stats)
R
regex_ (CogAtLemmatizer attribute)
RFX_GLM (class in nimare.meta.ibma)
,
[1]
rfx_glm() (in module nimare.meta.esma)
,
[1]
round2() (in module nimare.utils)
S
save() (ALE method)
,
[1]
(ALEKernel method)
,
[1]
(ALESubtraction method)
,
[1]
(BHICP method)
,
[1]
(BoltzmannModel method)
(CoordCBP method)
,
[1]
(Dataset method)
(Estimator method)
(FFX_GLM method)
,
[1]
(Fishers method)
,
[1]
(GCLDAModel method)
(HPGRF method)
,
[1]
(IBMAEstimator method)
,
[1]
(ImCBP method)
,
[1]
(KDA method)
,
[1]
(KDAKernel method)
,
[1]
(KernelTransformer method)
(LDAModel method)
(MAMP method)
,
[1]
(MAPBOT method)
,
[1]
(MFX_GLM method)
,
[1]
(MKDAChi2 method)
,
[1]
(MKDADensity method)
,
[1]
(MKDAKernel method)
,
[1]
(NiMAREBase method)
(Peaks2MapsKernel method)
,
[1]
(RFX_GLM method)
,
[1]
(SBLFR method)
,
[1]
(SBR method)
,
[1]
(SCALE method)
,
[1]
(Stouffers method)
,
[1]
(Text2BrainModel method)
(Transformer method)
(WeightedStouffers method)
,
[1]
(Word2BrainModel method)
save_maps() (MetaResult method)
SBLFR (class in nimare.meta.cbma.model)
,
[1]
SBR (class in nimare.meta.cbma.model)
,
[1]
SCALE (class in nimare.meta.cbma.ale)
,
[1]
scale_workflow() (in module nimare.workflows.scale)
,
[1]
set_params() (ALE method)
,
[1]
(ALEKernel method)
,
[1]
(ALESubtraction method)
,
[1]
(BHICP method)
,
[1]
(BoltzmannModel method)
(CoordCBP method)
,
[1]
(Dataset method)
(Estimator method)
(FFX_GLM method)
,
[1]
(Fishers method)
,
[1]
(GCLDAModel method)
(HPGRF method)
,
[1]
(IBMAEstimator method)
,
[1]
(ImCBP method)
,
[1]
(KDA method)
,
[1]
(KDAKernel method)
,
[1]
(KernelTransformer method)
(LDAModel method)
(MAMP method)
,
[1]
(MAPBOT method)
,
[1]
(MFX_GLM method)
,
[1]
(MKDAChi2 method)
,
[1]
(MKDADensity method)
,
[1]
(MKDAKernel method)
,
[1]
(NiMAREBase method)
(Peaks2MapsKernel method)
,
[1]
(RFX_GLM method)
,
[1]
(SBLFR method)
,
[1]
(SBR method)
,
[1]
(SCALE method)
,
[1]
(Stouffers method)
,
[1]
(Text2BrainModel method)
(Transformer method)
(WeightedStouffers method)
,
[1]
(Word2BrainModel method)
slice() (Dataset method)
Stouffers (class in nimare.meta.ibma)
,
[1]
stouffers() (in module nimare.meta.esma)
,
[1]
T
t_to_z() (in module nimare.stats)
tal2mni() (in module nimare.utils)
text2brain() (in module nimare.decode.encode)
,
[1]
Text2BrainModel (class in nimare.annotate.vector)
transform() (ALEKernel method)
,
[1]
(CogAtLemmatizer method)
(FDRCorrector method)
(FWECorrector method)
(KDAKernel method)
,
[1]
(KernelTransformer method)
(MKDAKernel method)
,
[1]
(Peaks2MapsKernel method)
,
[1]
(Transformer method)
Transformer (class in nimare.base)
two_way() (in module nimare.stats)
U
update_path() (Dataset method)
V
vox2mm() (in module nimare.utils)
W
weighted_stouffers() (in module nimare.meta.esma)
,
[1]
WeightedStouffers (class in nimare.meta.ibma)
,
[1]
Word2BrainModel (class in nimare.annotate.vector)
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