NiMARE
0.0.3
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NiMARE: Neuroimaging Meta-Analysis Research Environment
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Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
ALE (class in nimare.meta.cbma.ale)
ale_sleuth_workflow() (in module nimare.workflows.ale)
ALEKernel (class in nimare.meta.cbma.kernel)
ALESubtraction (class in nimare.meta.cbma.ale)
B
BoltzmannModel (class in nimare.annotate.boltzmann)
brainmap_decode() (in module nimare.decode.discrete)
BrainMapDecoder (class in nimare.decode.discrete)
C
CogAtLemmatizer (class in nimare.annotate.cogat)
compute_log_likelihood() (GCLDAModel method)
conperm_workflow() (in module nimare.workflows.conperm)
convert_neurosynth_to_dataset() (in module nimare.io)
convert_neurosynth_to_dict() (in module nimare.io)
convert_neurosynth_to_json() (in module nimare.io)
convert_sleuth_to_dataset() (in module nimare.io)
convert_sleuth_to_dict() (in module nimare.io)
convert_sleuth_to_json() (in module nimare.io)
CoordCBP (class in nimare.parcellate.cbp)
copy() (MetaResult method)
correct_fdr_bh() (MKDAChi2 method)
correct_fwe_montecarlo() (ALE method)
(KDA method)
(MKDAChi2 method)
(MKDADensity method)
CorrelationDecoder (class in nimare.decode.continuous)
CorrelationDistributionDecoder (class in nimare.decode.continuous)
D
Dataset (class in nimare.dataset)
download_abstracts() (in module nimare.extract)
download_cognitive_atlas() (in module nimare.extract)
download_mallet() (in module nimare.extract)
download_nidm_pain() (in module nimare.extract)
download_peaks2maps_model() (in module nimare.extract)
E
Estimator (class in nimare.base)
expand_counts() (in module nimare.annotate.cogat)
extract_cogat() (in module nimare.annotate.cogat)
extract_cogpo() (in module nimare.annotate.cogpo)
F
fdr() (in module nimare.stats)
FDRCorrector (class in nimare.correct)
FFX_GLM (class in nimare.meta.ibma)
ffx_glm() (in module nimare.meta.ibma)
find_stem() (in module nimare.utils)
Fishers (class in nimare.meta.ibma)
fishers() (in module nimare.meta.esma)
fit() (ALE method)
(ALESubtraction method)
(BrainMapDecoder method)
(CoordCBP method)
(CorrelationDecoder method)
(CorrelationDistributionDecoder method)
(Estimator method)
(FFX_GLM method)
(Fishers method)
(GCLDAModel method)
(ImCBP method)
(KDA method)
(LDAModel method)
(MAMP method)
(MAPBOT method)
(MFX_GLM method)
(MKDAChi2 method)
(MKDADensity method)
(NeurosynthDecoder method)
(RFX_GLM method)
(SCALE method)
(Stouffers method)
(WeightedStouffers method)
fsl_glm() (in module nimare.meta.ibma)
FWECorrector (class in nimare.correct)
G
gclda_decode_map() (in module nimare.decode.continuous)
gclda_decode_roi() (in module nimare.decode.discrete)
gclda_encode() (in module nimare.decode.encode)
GCLDAModel (class in nimare.annotate.gclda)
generate_cooccurrence() (in module nimare.annotate.text)
generate_counts() (in module nimare.annotate.text)
get() (Dataset method)
get_images() (Dataset method)
get_labels() (Dataset method)
get_map() (MetaResult method)
get_masker() (in module nimare.utils)
get_metadata() (Dataset method)
get_params() (ALE method)
(ALEKernel method)
(ALESubtraction method)
(BoltzmannModel method)
(BrainMapDecoder method)
(CoordCBP method)
(CorrelationDecoder method)
(CorrelationDistributionDecoder method)
(Dataset method)
(Estimator method)
(FFX_GLM method)
(Fishers method)
(GCLDAModel method)
(ImCBP method)
(KDA method)
(KDAKernel method)
(KernelTransformer method)
(LDAModel method)
(MAMP method)
(MAPBOT method)
(MFX_GLM method)
(MKDAChi2 method)
(MKDADensity method)
(MKDAKernel method)
(NeurosynthDecoder method)
(NiMAREBase method)
(Peaks2MapsKernel method)
(RFX_GLM method)
(SCALE method)
(Stouffers method)
(Text2BrainModel method)
(Transformer method)
(WeightedStouffers method)
(Word2BrainModel method)
get_probs() (GCLDAModel method)
get_resource_path() (in module nimare.utils)
get_studies_by_coordinate() (Dataset method)
get_studies_by_label() (Dataset method)
get_studies_by_mask() (Dataset method)
get_template() (in module nimare.utils)
get_texts() (Dataset method)
I
ImCBP (class in nimare.parcellate.cbp)
K
KDA (class in nimare.meta.cbma.mkda)
KDAKernel (class in nimare.meta.cbma.kernel)
KernelTransformer (class in nimare.meta.cbma.kernel)
L
LDAModel (class in nimare.annotate.lda)
listify() (in module nimare.utils)
load() (ALE class method)
(ALEKernel class method)
(ALESubtraction class method)
(BoltzmannModel class method)
(BrainMapDecoder class method)
(CoordCBP class method)
(CorrelationDecoder class method)
(CorrelationDistributionDecoder class method)
(Dataset class method)
(Estimator class method)
(FFX_GLM class method)
(Fishers class method)
(GCLDAModel class method)
(ImCBP class method)
(KDA class method)
(KDAKernel class method)
(KernelTransformer class method)
(LDAModel class method)
(MAMP class method)
(MAPBOT class method)
(MFX_GLM class method)
(MKDAChi2 class method)
(MKDADensity class method)
(MKDAKernel class method)
(NeurosynthDecoder class method)
(NiMAREBase class method)
(Peaks2MapsKernel class method)
(RFX_GLM class method)
(SCALE class method)
(Stouffers class method)
(Text2BrainModel class method)
(Transformer class method)
(WeightedStouffers class method)
(Word2BrainModel class method)
M
macm_workflow() (in module nimare.workflows.macm)
MAMP (class in nimare.parcellate.mamp)
MAPBOT (class in nimare.parcellate.mapbot)
MetaResult (class in nimare.results)
MFX_GLM (class in nimare.meta.ibma)
mfx_glm() (in module nimare.meta.ibma)
MKDAChi2 (class in nimare.meta.cbma.mkda)
MKDADensity (class in nimare.meta.cbma.mkda)
MKDAKernel (class in nimare.meta.cbma.kernel)
mm2vox() (in module nimare.transforms)
mni2tal() (in module nimare.transforms)
N
neurosynth_decode() (in module nimare.decode.discrete)
NeurosynthDecoder (class in nimare.decode.discrete)
nimare.annotate (module)
nimare.annotate.boltzmann (module)
nimare.annotate.cogat (module)
nimare.annotate.cogpo (module)
nimare.annotate.gclda (module)
nimare.annotate.lda (module)
nimare.annotate.text (module)
nimare.annotate.text2brain (module)
nimare.annotate.utils (module)
nimare.annotate.word2brain (module)
nimare.base (module)
nimare.correct (module)
nimare.dataset (module)
nimare.decode (module)
nimare.decode.continuous (module)
nimare.decode.discrete (module)
nimare.decode.encode (module)
nimare.extract (module)
nimare.io (module)
nimare.meta (module)
nimare.meta.cbma.ale (module)
nimare.meta.cbma.kernel (module)
nimare.meta.cbma.mkda (module)
nimare.meta.esma (module)
nimare.meta.ibma (module)
nimare.parcellate (module)
nimare.parcellate.cbp (module)
nimare.parcellate.mamp (module)
nimare.parcellate.mapbot (module)
nimare.results (module)
nimare.stats (module)
nimare.transforms (module)
nimare.utils (module)
nimare.workflows (module)
nimare.workflows.ale (module)
nimare.workflows.conperm (module)
nimare.workflows.macm (module)
nimare.workflows.peaks2maps (module)
nimare.workflows.scale (module)
NiMAREBase (class in nimare.base)
null_to_p() (in module nimare.stats)
O
one_way() (in module nimare.stats)
P
p_to_z() (in module nimare.transforms)
peaks2maps_workflow() (in module nimare.workflows.peaks2maps)
Peaks2MapsKernel (class in nimare.meta.cbma.kernel)
pearson() (in module nimare.stats)
R
RFX_GLM (class in nimare.meta.ibma)
rfx_glm() (in module nimare.meta.esma)
round2() (in module nimare.utils)
S
save() (ALE method)
(ALEKernel method)
(ALESubtraction method)
(BoltzmannModel method)
(BrainMapDecoder method)
(CoordCBP method)
(CorrelationDecoder method)
(CorrelationDistributionDecoder method)
(Dataset method)
(Estimator method)
(FFX_GLM method)
(Fishers method)
(GCLDAModel method)
(ImCBP method)
(KDA method)
(KDAKernel method)
(KernelTransformer method)
(LDAModel method)
(MAMP method)
(MAPBOT method)
(MFX_GLM method)
(MKDAChi2 method)
(MKDADensity method)
(MKDAKernel method)
(NeurosynthDecoder method)
(NiMAREBase method)
(Peaks2MapsKernel method)
(RFX_GLM method)
(SCALE method)
(Stouffers method)
(Text2BrainModel method)
(Transformer method)
(WeightedStouffers method)
(Word2BrainModel method)
save_maps() (MetaResult method)
SCALE (class in nimare.meta.cbma.ale)
scale_workflow() (in module nimare.workflows.scale)
sd_to_var() (in module nimare.transforms)
se_to_var() (in module nimare.transforms)
set_params() (ALE method)
(ALEKernel method)
(ALESubtraction method)
(BoltzmannModel method)
(BrainMapDecoder method)
(CoordCBP method)
(CorrelationDecoder method)
(CorrelationDistributionDecoder method)
(Dataset method)
(Estimator method)
(FFX_GLM method)
(Fishers method)
(GCLDAModel method)
(ImCBP method)
(KDA method)
(KDAKernel method)
(KernelTransformer method)
(LDAModel method)
(MAMP method)
(MAPBOT method)
(MFX_GLM method)
(MKDAChi2 method)
(MKDADensity method)
(MKDAKernel method)
(NeurosynthDecoder method)
(NiMAREBase method)
(Peaks2MapsKernel method)
(RFX_GLM method)
(SCALE method)
(Stouffers method)
(Text2BrainModel method)
(Transformer method)
(WeightedStouffers method)
(Word2BrainModel method)
slice() (Dataset method)
Stouffers (class in nimare.meta.ibma)
stouffers() (in module nimare.meta.esma)
svar_to_var() (in module nimare.transforms)
T
t_to_beta() (in module nimare.transforms)
t_to_z() (in module nimare.transforms)
tal2mni() (in module nimare.transforms)
text2brain() (in module nimare.decode.encode)
Text2BrainModel (class in nimare.annotate.text2brain)
transform() (ALEKernel method)
(BrainMapDecoder method)
(CogAtLemmatizer method)
(CorrelationDecoder method)
(CorrelationDistributionDecoder method)
(FDRCorrector method)
(FWECorrector method)
(KDAKernel method)
(KernelTransformer method)
(MKDAKernel method)
(NeurosynthDecoder method)
(Peaks2MapsKernel method)
(Transformer method)
Transformer (class in nimare.base)
two_way() (in module nimare.stats)
U
uk_to_us() (in module nimare.utils)
update_path() (Dataset method)
V
vox2mm() (in module nimare.transforms)
W
weighted_stouffers() (in module nimare.meta.esma)
WeightedStouffers (class in nimare.meta.ibma)
Word2BrainModel (class in nimare.annotate.word2brain)
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