Note
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Using NIMADS with NiMARE
How to use the NeuroImaging Meta-Analysis Data Structure (NIMADS) with NiMARE.
from requests import request
from nimare.io import convert_nimads_to_dataset
from nimare.nimads import Studyset
Download Data from NeuroStore
def download_file(url):
"""Download a file from NeuroStore."""
response = request("GET", url)
return response.json()
nimads_studyset = download_file("https://neurostore.org/api/studysets/Cv2LLUqG76W9?nested=true")
nimads_annotation = download_file("https://neurostore.org/api/annotations/76PyNqoTNEsE")
Load Data
Load the json files into a NiMADS Studyset object.
Convert to NiMARE Dataset
Convert the NiMADS Studyset object to a NiMARE Dataset object. Then you can run NiMARE analyses on the Dataset object.
Directly to NiMARE Dataset
Alternatively, you can convert the NiMADS json files directly to a NiMARE Dataset object if you wish to skip using the nimads studyset object directly.
nimare_dset_2 = convert_nimads_to_dataset(nimads_studyset, nimads_annotation)
nimare_dset_2.coordinates.head()
Total running time of the script: (0 minutes 0.731 seconds)